Just the Central America Govt. General, I am aware that the rest of the mentioned countries would be puppet states.
When talking about Axis plans everything was inconsistent, Japan also mentioned that the Philippines would be annexed but later on they opted out in making it a puppet state, though I also read somewhere that only Mindanao would be annexed to Japan, it sucks that I forgot about sources for a lot of Axis plans that I read over the last decade.
Not really inconsistent, but time dependent. In 1941 Japan had planned on fully annexing the Philippines. By 1944-1945 as the war wasn't going as planned, they planned to turn the Philippines into a puppet state, likely because that might have garnered more Filipino support.