I'm always amazed at this attitude. As an Eastern Orthodox, you should thank the Ottomans for revitalizing and protecting Eastern Orthodoxy. The Byzantines utterly failed to defend Orthodox lands against Latin powers, who when the Ottomans emerged ruled most of the Greek-speaking world and were gradually assimilating and destroying it. Constantinople was in ruins, with a tiny population, the roofs of buildings having been stripped for metal, decaying and suffering water damage.
The Ottomans placed all Orthodox Christians in all the former Byzantine lands and beyond under the authority of the Patriarchate for the first time in centuries and allowed a cultural revival and the preservation of a culture that might otherwise have disappeared. Plus, they gave you much better cuisine, and coffee.
So think about that! Notaras was quite right when he said "Better a Sultan's turban than a cardinal's cap!" One preserved Orthodox Christian culture and the other wanted to end it.
As an Eastern Orthodox I think that the Ottomans placed all of Orthodoxy in the Balkanic space under Greek domininace and stoped the development of national Churches, also I doubt that the conquest of Constaniople by Latins in the end of Orthodoxy, Orthodoxy would still flourish in Serbia,Russia,Bulgaria,Georgia and Wallachia and Moldavia.
I don't see what was so good about Greek dominance, zou seem to think that Orthodoxy existed only in Byzantium and no anywhere else.