Unless you're launching something more than an Apollo CSM, you don't really need 2 F-1As or any uprating to the S-IVB. J-2S is likely, as it is cheaper than the flown J-2, and F-1A is already ready for production as well. So, the optimal crew vehicle is probably:
1: Standard LES/CM, possibly with provision for 5-man rescue mission.
2: SM modified for longer on-orbit life, smaller prop tanks, and removable cargo racks. Possibly replacing SPS with an LM ascent engine, and adding small solar arrays.
3: S-IVB with J-2S and slightly upgraded instrument unit.
4: First stage with single F-1A, height scaled to fit performance of second stage and CSM.
5: New-build, lightweight MLP for use with existing VAB/LC-39. No STS-style fixed launch tower/RSS.
One other thing to consider is an unmanned logistics vehicle. This doesn't need to be as big as Apollo, and could in fact be launched by a Atlas-Centaur. The Multiple Docking Adaptor (MDA) on Skylab was designed for exactly that, and would serve as a perfect place to remotely dock a logistics vehicle.
Finally, I would be supprised if the manned vehicle would be used for planetary mission; Titan IIIC is much better suited for that.
1: Standard LES/CM, possibly with provision for 5-man rescue mission.
2: SM modified for longer on-orbit life, smaller prop tanks, and removable cargo racks. Possibly replacing SPS with an LM ascent engine, and adding small solar arrays.
3: S-IVB with J-2S and slightly upgraded instrument unit.
4: First stage with single F-1A, height scaled to fit performance of second stage and CSM.
5: New-build, lightweight MLP for use with existing VAB/LC-39. No STS-style fixed launch tower/RSS.
One other thing to consider is an unmanned logistics vehicle. This doesn't need to be as big as Apollo, and could in fact be launched by a Atlas-Centaur. The Multiple Docking Adaptor (MDA) on Skylab was designed for exactly that, and would serve as a perfect place to remotely dock a logistics vehicle.
Finally, I would be supprised if the manned vehicle would be used for planetary mission; Titan IIIC is much better suited for that.