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We've had a few threads about a resistance movement post-ACW. Reading about it gave me a fun little mental scene of President Grant personally asking Lee to head up the anti-resistance crack down (obviously much nicer named than that). Probably circa 1868 or a little before that. Basically in this scenario there are multiple Confederate resistance cells that are attacking Federal troops and pretty much causing everyone (black or white) problems and sustaining bad blood North v South.
If this is not plausible I would still be interested in discussing a scenario of how such a resistance could form and how it could help improve Civil Rights in the long term (w/ greater Northern control over the South).