Only a couple of things: no way Mary's daughter will be left behind in France and specially not in the custody of Catherine de Medici when she is the heiress presumptive of Scotland until the birth of a brother while she has no right to the French crown. If the younger Marie will stay for some time in France she will be left to her maternal relatives, the Guisas, not her paternal ones and she would sent in Scotland as soon her mother call her...Scenario: Mary, Queen of Scots has a daughter by Francis II of France, and is forced to leave her in the care of Catherine de Medici when she returns to Scotland. Then, when she begins talks with England, she takes Elizabeth of England up on her offer and agrees to marry Robert Dudley, only to have the Queen of England and her favourite elope on the way there, and that rightfully leaves her feeling put out. Henry Stuart fails to impress her and instead she chooses the Hapsburg option, marrying the Archduke of Austria soon after. England and Scotland find themselves incredibly antagonistic over the next few years, with Mary using Elizabeth's guilt over the way this has all gone to balance against Catherine de Medici, who remains suspicious of Mary due to her guise connections. The Princess Marie in France, meanwhile, struggles to find a husband in a court where her grandmother is unwilling to allow her to marry at all, leaving her single when the King of Navarre, now King of France, divorces her aunt and approaches her for marriage. England and Scotland find common ground with a match between the eldest Scottish Princess and the Prince of Wales, although Mary remains upset at her gilting throughout the rest of her days.
Mary I, Queen of Scotland (b.1542: d.1593) m. Francis II, King of France (b.1544: d.1560) (a), Charles, Archduke of Austria (b.1540: d.1590) (b)
1a) Marie, Princess of France and Scotland (b.1560: d.1622) m. Henry IV, King of France (b.1553: d.1610) (a)1a) Francis III, King of France (b.1599)2a) Marie, Princess of France (b.1601)3a) Stillborn Son (c.1603)4a) Louis, Duke of Orleans (b.1604)2b) Elizabeth, Princess of Scotland (b.1566: d.1601) m. Henry IX, King of England (b.1565: d.1622) (a)- had surviving issue3b) James, Duke of Rothesay (b.1568: d.1583)4b) Stillborn Daughter (c.1570)5b) Stillborn Son (c.1571)6b) Charles I, King of Scotland (b.1574: d.1626) m. Maria Anna of Bavaria (b.1574: d.1616) (a)1a) Eleanor, Princess of Scotland (b.1595: d.1526)2a) Christine, Princess of Scotland (b.1597)3a) Stillborn Daughter (c.1598)4a) James VI, King of Scotland (b.1600: d.1628)5a) Stillborn Daughter (c.1603)6a) Mary, Princess of Scotland (b.1605)7a) Stillborn Son (c.1606)8a) Charles, Prince of Scotland (b.1608: d.1608)7b) Margaret, Princess of Scotland (b.1576: d.1578)8b) Robert, Duke of Albany (b.1578: d.1610) m. Jane Campbell (c.1580: d.1650) (a)1a) Margaret von Hapsburg of Albany (b.1600)2a) Stillborn Son (c.1603)3a) Elizabeth von Hapsburg of Albany (b.1606)4a) Anabella von Hapsburg of Albany (b.1608)5a) Stillborn Son (c.1610)6a) Joan von Hapsburg of Albany (b.1613)7a) Stillborn Son (c.1615)8a) Mary von Hapsburg of Albany (b.1617)9b) Stillborn Daughter (c.1579)10b) Anne, Princess of Scotland (b.1581: d.1625) m. William Keith, Earl Marischal (b.1585: d.1635) (a)1a) James Keith, Earl of Marischal (b.1602)2a) Sir Ferdinand Keith (b.1604: d.1630)3a) Stillborn Son (c.1605)4a) Mary Keith (b.1606)5a) Stillborn Son (c.1608)6a) Charles Keith (b.1610)7a) Grace Keith (b.1613)8a) Stillborn Son (c.1615)
Elizabeth I, Queen of England (b.1533: d.1603) m. Robert Dudley, Earl of Leicester (b.1532: d.1586) (a)
1a) Henry IX, King of England (b.1565: d.1622) m. Elizabeth, Princess of Scotland (b.1566: d.1601) (a), Catherine of Lorraine (b.1573: d.1648) (b)1a) Elizabeth Dudley, Princess of England (b.1586: d.1621) m. Thomas Howard, Duke of Norfolk (b.1586: d.1646) (a)1a) Catherine Howard (b.1603)2a) Robert I, King of England and Ireland (1608)3a) Stillborn Daughter (c.1611)4a) Thomas Howard, Duke of Norfolk (b.1615)5a) Elizabeth Howard (b.1619)2a) Stillborn Son (c.1587)3a) Stillborn Daughter (c.1588)4a) Robert Dudley, Earl of Leicester (b.1590: d.1599)5a) Stillborn Daughter (c.1592)6a) Anne Dudley, Princess of England (b.1593)7a) Henry Dudley, Earl of Leicester (b.1595: d.1610)8a) Stillborn Daughter (c.1597)9a) Margaret Dudley, Princess of England (b.1600: d.1606)10b) Henry X, King of England and Ireland (b.1603: d.1625)11b) Stillborn Daughter (c.1605)12b) Edward Dudley, Duke of Clarence (b.1604: d.1620)13b) Claude, Princess of England and Ireland (b.1607)14b) Arthur I, King of England and Ireland (b.1609: d.1633)2a) Stillborn Daughter (c.1567)3a) Robert Dudley, Duke of York (b.1570: d.1608) m. Elizabeth de Vere (b.1575: d.1627) (a)1a) Edward Dudley, Duke of York (b.1598)2a) Henry Dudley (b.1599: d.1612)3a) Sir John Dudley (b.1603)
I think pretty unlikely who Mary’s second daughter will be called Elizabeth her and would be better calling her Anne (after her paternal grandmother and the Duchess of Guisa), with the next one as Elizabeth or better Isabelle (as she would be named after the Queen of Spain not that of England).
Also Robert for Mary’s third son? Alexander or David would be better if you go native or Francis (after the Duke of Guisa), Maximilian or Ferdinand (paternal uncle and grandfather) are more likely to be chosen
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