Is there any way for the French Resistance to be ignored by the Allies in much the same way that the various German Resistance groups were ignored?
The problem with marginalising the Maquis would be the Free French. As long as the Free French forces exist, then even if Britain, the Soviet Union and the USA all ignore the resistance, de Gaulle will not.
Of course, if there were no Free French forces, that would be a horse of a different colour. So... the PoD that gets the French Resistance ignored by the allies is probably to have Felix Eboue (who, as Governor of Chad, provided the catalyst that helped the Free French forces to form) die in early 1940 instead of late 1943. Without Eboue, de Gaulle himself would be much more isolated. Many high ranking officers in the US forces, particularly the Navy, did not recognise what they called "the so-called Free-French Navy" in OTL (until the USA entered the war). Without Eboue, this may well have been the Official position of not only the American but perhaps the British government as well.
I think even then though, the British and Soviets would attempt to set up some kind of resistance force, even if they did not trust the one that already existed.